synbio
Reference
Designs
Protocols
Steps
Examples
Assembly
Gibson Assembly with primer generation
Cloning via restriction digest and ligation
Protocols
Gibson Assembly of a plasmid library
Gibson Assembly of a single plasmid
Golden Gate Assembly of a single plasmid
Combinatorial Golden Gate Assembly: all valid plasmid combinations
Combinatorial Golden Gate Assembly with bins: all plasmid combinations between bins
Annotation
Annotating a SeqRecord with a curated SeqFeature database
synbio
Docs
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Index
Index
A
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B
|
C
|
D
|
E
|
G
|
H
|
I
|
L
|
M
|
N
|
O
|
P
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R
|
S
|
T
|
V
A
Add (class in synbio.steps)
add (synbio.steps.Add attribute)
add() (synbio.protocol.Protocol method)
add_instruction() (synbio.protocol.Protocol method)
append() (synbio.designs.CombinatorialBins method)
(synbio.designs.Plasmid method)
(synbio.designs.PlasmidLibrary method)
B
bins (synbio.designs.CombinatorialBins attribute)
C
Clone (class in synbio.protocols.clone)
Combinatorial (class in synbio.designs)
CombinatorialBins (class in synbio.designs)
cycles (synbio.steps.ThermoCycle attribute)
D
design (synbio.protocol.Protocol attribute)
dest (synbio.steps.Setup attribute)
E
extension (synbio.steps.ThermoCycle attribute)
G
Gibson (class in synbio.protocols.gibson)
GoldenGate (class in synbio.protocols.goldengate)
H
HeatShock (in module synbio.steps)
how (synbio.protocol.Protocol attribute)
I
Incubate (class in synbio.steps)
input() (synbio.protocol.Protocol property)
instructions (synbio.steps.Add attribute)
(synbio.steps.Pipette attribute)
(synbio.steps.Setup attribute)
(synbio.steps.ThermoCycle attribute)
L
linear (synbio.designs.Combinatorial attribute)
(synbio.designs.CombinatorialBins attribute)
(synbio.designs.Plasmid attribute)
(synbio.designs.PlasmidLibrary attribute)
M
Move (class in synbio.steps)
mutate (synbio.steps.Incubate attribute)
(synbio.steps.ThermoCycle attribute)
N
name (synbio.protocol.Protocol attribute)
(synbio.steps.Add attribute)
(synbio.steps.Incubate attribute)
(synbio.steps.Pipette attribute)
(synbio.steps.Setup attribute)
(synbio.steps.ThermoCycle attribute)
O
output() (synbio.protocol.Protocol property)
P
Pipette (class in synbio.steps)
Plasmid (class in synbio.designs)
PlasmidLibrary (class in synbio.designs)
Protocol (class in synbio.protocol)
R
records (synbio.designs.Combinatorial attribute)
(synbio.designs.Plasmid attribute)
run() (synbio.protocol.Protocol method)
S
separate_reagents (synbio.protocol.Protocol attribute)
sets (synbio.designs.PlasmidLibrary attribute)
Setup (class in synbio.steps)
Step (class in synbio.protocol)
synbio.designs (module)
synbio.steps (module)
T
target (synbio.steps.Pipette attribute)
(synbio.steps.Setup attribute)
temp (synbio.steps.Incubate attribute)
temps (synbio.steps.ThermoCycle attribute)
ThermoCycle (class in synbio.steps)
to_csv() (synbio.protocol.Protocol method)
to_fasta() (synbio.protocol.Protocol method)
to_genbank() (synbio.protocol.Protocol method)
to_picklists() (synbio.protocol.Protocol method)
to_txt() (synbio.protocol.Protocol method)
type (synbio.steps.Move attribute)
V
volume (synbio.steps.Add attribute)
(synbio.steps.Move attribute)