repp annotate
Annotate a plasmid using features
Synopsis
Accepts a sequence file as input and runs alignment against the embedded feature database. Each alignment feature is included as a feature in the output: a Genbank file. Individual databases can be selected, in which case the entries in the database will be used in the alignment rather than the feature database.
The feature database and the default 96% identity are based on information from SnapGene
repp annotate [seq] [flags]
Options
-c, --cull remove features enclosed in others (default true)
-d, --dbs string comma separated list sequence databases to consider as features
-x, --exclude string keywords for excluding features
-h, --help help for annotate
-p, --identity int match %-identity threshold (see 'blastn -help') (default 96)
-i, --in string input file name
-n, --names log feature names to the console
-o, --out string output file name
Options inherited from parent commands
-v, --verbose write DEBUG logs
SEE ALSO
- repp - repository-based plasmid design. Build cost-efficient plasmids